Package: PAICE 1.0.2

Alberto J. Coello

PAICE: Phylogeographic Analysis of Island Colonization Events

Estimation of the number of colonization events between islands of the same archipelago for a species. It uses rarefaction curves to control for both field and genetic sample sizes as it was described in Coello et al. (2022) <doi:10.1111/jbi.14341>.

Authors:Alberto J. Coello [aut, cre], Mario Fernández-Mazuecos [aut], Ruben H. Heleno [aut], Pablo Vargas [aut]

PAICE_1.0.2.tar.gz
PAICE_1.0.2.zip(r-4.5)PAICE_1.0.2.zip(r-4.4)PAICE_1.0.2.zip(r-4.3)
PAICE_1.0.2.tgz(r-4.4-any)PAICE_1.0.2.tgz(r-4.3-any)
PAICE_1.0.2.tar.gz(r-4.5-noble)PAICE_1.0.2.tar.gz(r-4.4-noble)
PAICE_1.0.2.tgz(r-4.4-emscripten)PAICE_1.0.2.tgz(r-4.3-emscripten)
PAICE.pdf |PAICE.html
PAICE/json (API)

# Install 'PAICE' in R:
install.packages('PAICE', repos = c('https://paicecode.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/paicecode/paice/issues

Datasets:
  • CmonsData - Occurrence matrix of _Cistus monspeliensis_ in the Canary Islands
  • CmonsNetwork - Genealogical relationship of _Cistus monspeliensis_ haplotypes
  • CmonsRare - Simulated rarefaction curves of _Cistus monspeliensis_

On CRAN:

biogeographycolonizationisland

5 exports 1 stars 1.08 score 0 dependencies 4 scripts 897 downloads

Last updated 2 months agofrom:7e48399ca0. Checks:OK: 1 ERROR: 1 WARNING: 5. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 14 2024
R-4.5-winWARNINGSep 14 2024
R-4.5-linuxERRORSep 14 2024
R-4.4-winWARNINGSep 14 2024
R-4.4-macWARNINGSep 14 2024
R-4.3-winWARNINGSep 14 2024
R-4.3-macWARNINGSep 14 2024

Exports:colonizationgeneticResamplingmaxColrarecolread.rarecol

Dependencies: