Package: PAICE 1.0.2

Alberto J. Coello

PAICE: Phylogeographic Analysis of Island Colonization Events

Estimation of the number of colonization events between islands of the same archipelago for a species. It uses rarefaction curves to control for both field and genetic sample sizes as it was described in Coello et al. (2022) <doi:10.1111/jbi.14341>.

Authors:Alberto J. Coello [aut, cre], Mario Fernández-Mazuecos [aut], Ruben H. Heleno [aut], Pablo Vargas [aut]

PAICE_1.0.2.tar.gz
PAICE_1.0.2.zip(r-4.5)PAICE_1.0.2.zip(r-4.4)PAICE_1.0.2.zip(r-4.3)
PAICE_1.0.2.tgz(r-4.5-any)PAICE_1.0.2.tgz(r-4.4-any)PAICE_1.0.2.tgz(r-4.3-any)
PAICE_1.0.2.tar.gz(r-4.5-noble)PAICE_1.0.2.tar.gz(r-4.4-noble)
PAICE_1.0.2.tgz(r-4.4-emscripten)PAICE_1.0.2.tgz(r-4.3-emscripten)
PAICE.pdf |PAICE.html✨
PAICE/json (API)

# Install 'PAICE' in R:
install.packages('PAICE', repos = c('https://paicecode.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/paicecode/paice/issues

Datasets:
  • CmonsData - Occurrence matrix of _Cistus monspeliensis_ in the Canary Islands
  • CmonsNetwork - Genealogical relationship of _Cistus monspeliensis_ haplotypes
  • CmonsRare - Simulated rarefaction curves of _Cistus monspeliensis_

On CRAN:

Conda:

biogeographycolonizationisland

3.00 score 1 stars 4 scripts 609 downloads 5 exports 0 dependencies

Last updated 9 months agofrom:7e48399ca0. Checks:1 OK, 2 ERROR, 6 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 13 2025
R-4.5-winWARNINGMar 13 2025
R-4.5-macWARNINGMar 13 2025
R-4.5-linuxERRORMar 13 2025
R-4.4-winWARNINGMar 13 2025
R-4.4-macWARNINGMar 13 2025
R-4.4-linuxERRORMar 13 2025
R-4.3-winWARNINGMar 13 2025
R-4.3-macWARNINGMar 13 2025

Exports:colonizationgeneticResamplingmaxColrarecolread.rarecol

Dependencies: