{
  "_id": "6abcd25f99f7aa8c6aa4c52f",
  "Package": "PAICE",
  "Type": "Package",
  "Title": "Phylogeographic Analysis of Island Colonization Events",
  "Version": "1.0.2",
  "Authors@R": "c(\nperson(\ngiven   = \"Alberto J.\",\nfamily  = \"Coello\",\nrole    = c(\"aut\", \"cre\"),\nemail   = \"albjcoello@gmail.com\",\ncomment = c(\"ORCID = 0000-0002-2665-3726\")\n),\nperson(\ngiven   = \"Mario\",\nfamily  = \"Fernández-Mazuecos\",\nrole    = c(\"aut\"),\ncomment = c(\"ORCID = 0000-0003-4027-6477\")\n),\nperson(\ngiven   = \"Ruben H.\",\nfamily  = \"Heleno\",\nrole    = c(\"aut\"),\ncomment = c(\"ORCID = 0000-0002-4808-4907\")\n),\nperson(\ngiven   = \"Pablo\",\nfamily  = \"Vargas\",\nrole    = c(\"aut\"),\ncomment = c(\"ORCID = 0000-0003-4502-0382\")\n)\n)",
  "Description": "Estimation of the number of colonization events between\nislands of the same archipelago for a species. It uses\nrarefaction curves to control for both field and genetic sample\nsizes as it was described in Coello et al. (2022)\n<doi:10.1111/jbi.14341>.",
  "License": "GPL-2",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "Date": "2024-07-15",
  "URL": "<https://github.com/PAICEcode/PAICE>",
  "BugReports": "https://github.com/PAICEcode/PAICE/issues",
  "RoxygenNote": "7.3.2",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-09-30 08:38:00 UTC",
    "User": "root"
  },
  "Language": "en-US",
  "Repository": "https://paicecode.r-universe.dev",
  "Date/Publication": "2024-07-16 14:16:25 UTC",
  "RemoteUrl": "https://github.com/paicecode/paice",
  "RemoteRef": "HEAD",
  "RemoteSha": "7e48399ca056fc43c2cd0f1f5c5b66a11037fe13",
  "Author": "Alberto J. Coello [aut, cre] (ORCID = 0000-0002-2665-3726),\nMario Fernández-Mazuecos [aut] (ORCID = 0000-0003-4027-6477),\nRuben H. Heleno [aut] (ORCID = 0000-0002-4808-4907),\nPablo Vargas [aut] (ORCID = 0000-0003-4502-0382)",
  "Maintainer": "Alberto J. Coello <albjcoello@gmail.com>",
  "_user": "paicecode",
  "_type": "src",
  "_file": "PAICE_1.0.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/1fcf528650deda72850bd3d82277a6befdf9cba44ae9a3b7a3268a2b55d4cd39",
  "_filesize": 598796,
  "_sha256": "1fcf528650deda72850bd3d82277a6befdf9cba44ae9a3b7a3268a2b55d4cd39",
  "_expires": "2027-01-08T09:11:57.000Z",
  "_created": "2026-09-30T08:38:00.000Z",
  "_published": "2026-09-30T09:11:59.366Z",
  "_jobs": [
    {
      "job": 109807751710,
      "time": 123,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "11086360189"
    },
    {
      "job": 109807751776,
      "time": 116,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "11085403695"
    },
    {
      "job": 109807751696,
      "time": 152,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "11087540139"
    },
    {
      "job": 109807751705,
      "time": 191,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11086799300"
    },
    {
      "job": 109806562156,
      "time": 209,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11085507892"
    },
    {
      "job": 109807751630,
      "time": 104,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11085817405"
    },
    {
      "job": 109807751727,
      "time": 69,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "11085338831"
    },
    {
      "job": 109807751817,
      "time": 65,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "11085219399"
    },
    {
      "job": 109807751775,
      "time": 77,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11086076447"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/paicecode/actions/runs/36690544797",
  "_status": "success",
  "_upstream": "https://github.com/paicecode/paice",
  "_commit": {
    "id": "7e48399ca056fc43c2cd0f1f5c5b66a11037fe13",
    "author": "Alberto J. Coello <47033657+albertojcoello@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Update README.md",
    "time": 1721139385
  },
  "_maintainer": {
    "name": "Alberto J. Coello",
    "email": "albjcoello@gmail.com",
    "login": "albertojcoello",
    "description": "",
    "uuid": 47033657
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.6.0",
      "role": "Depends"
    },
    {
      "package": "spelling",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "paicecode",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "biogeography",
    "colonization",
    "island"
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "albertojcoello",
      "count": 22,
      "uuid": 47033657
    }
  ],
  "_userbio": {
    "uuid": 73165660,
    "type": "user",
    "name": "PAICE",
    "followers": 1,
    "description": "User maintained by @albertojcoello"
  },
  "_downloads": {
    "count": 376,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PAICE"
  },
  "_devurl": "https://github.com/paicecode/paice",
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/PAICE.html",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/paicecode/paice",
  "_realowner": "paicecode",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.1",
      "date": "2023-11-13"
    },
    {
      "version": "1.0.2",
      "date": "2024-07-15"
    }
  ],
  "_exports": [
    "colonization",
    "geneticResampling",
    "maxCol",
    "rarecol",
    "read.rarecol"
  ],
  "_datasets": [
    {
      "name": "CmonsData",
      "title": "Occurrence matrix of _Cistus monspeliensis_ in the Canary Islands",
      "object": "CmonsData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "isla",
        "population",
        "c1",
        "c2",
        "c3",
        "c4",
        "c5",
        "c6",
        "c7",
        "c8",
        "c9",
        "c10",
        "c11",
        "c12",
        "c13",
        "c14",
        "c15",
        "c16",
        "m1",
        "m2"
      ],
      "rows": 37,
      "table": true,
      "tojson": true
    },
    {
      "name": "CmonsNetwork",
      "title": "Genealogical relationship of _Cistus monspeliensis_ haplotypes",
      "object": "CmonsNetwork",
      "class": [
        "data.frame"
      ],
      "fields": [
        "haplotype",
        "ancestral",
        "change_position"
      ],
      "rows": 18,
      "table": true,
      "tojson": true
    },
    {
      "name": "CmonsRare",
      "title": "Simulated rarefaction curves of _Cistus monspeliensis_",
      "object": "CmonsRare",
      "class": [
        "rarecol"
      ],
      "fields": [],
      "table": true,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "PAICE",
      "title": "Phylogeographic Analysis of Island Colonization Events",
      "topics": [
        "PAICE-package",
        "PAICE"
      ]
    },
    {
      "page": "dot-onAttach",
      "title": ".onAttach start message",
      "topics": [
        ".onAttach"
      ]
    },
    {
      "page": "CmonsData",
      "title": "Occurrence matrix of _Cistus monspeliensis_ in the Canary Islands",
      "topics": [
        "CmonsData"
      ]
    },
    {
      "page": "CmonsNetwork",
      "title": "Genealogical relationship of _Cistus monspeliensis_ haplotypes",
      "topics": [
        "CmonsNetwork"
      ]
    },
    {
      "page": "CmonsRare",
      "title": "Simulated rarefaction curves of _Cistus monspeliensis_",
      "topics": [
        "CmonsRare"
      ]
    },
    {
      "page": "colonizations",
      "title": "Inference of minimum number of colonization events",
      "topics": [
        "colonization"
      ]
    },
    {
      "page": "geneticResampling",
      "title": "Simulate genetic sampling effort reduction",
      "topics": [
        "geneticResampling"
      ]
    },
    {
      "page": "maxCol",
      "title": "Asymptotic estimation of the number of colonization events",
      "topics": [
        "maxCol"
      ]
    },
    {
      "page": "plot.maxCol",
      "title": "Plot asymptotic estimators of colonization events",
      "topics": [
        "plot.maxCol"
      ]
    },
    {
      "page": "plot.rarecol",
      "title": "Plot rarefaction curve of colonization events",
      "topics": [
        "plot.rarecol"
      ]
    },
    {
      "page": "rarecol",
      "title": "Rarefaction curve of colonization events",
      "topics": [
        "rarecol"
      ]
    },
    {
      "page": "read.rarecol",
      "title": "Read files containing rarefaction curves of colonization events",
      "topics": [
        "read.rarecol"
      ]
    }
  ],
  "_readme": "https://github.com/paicecode/paice/raw/HEAD/README.md",
  "_rundeps": [],
  "_score": 2.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "paice",
  "_universes": [
    "paicecode",
    "albertojcoello"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-09-30T08:40:02.000Z",
      "distro": "resolute",
      "commit": "7e48399ca056fc43c2cd0f1f5c5b66a11037fe13",
      "fileid": "https://r2.ropensci.org/e46f029d01d462bb079320ade3bd2a08411fa2fb105454a77d5af056cea9e8fc",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/paicecode/actions/runs/36690544797"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-09-30T08:39:59.000Z",
      "distro": "resolute",
      "commit": "7e48399ca056fc43c2cd0f1f5c5b66a11037fe13",
      "fileid": "https://r2.ropensci.org/e01461e1fe0f7748fe489d48498ca3cd7eec504f2f884d15e44c07200b07db6f",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/paicecode/actions/runs/36690544797"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-09-30T09:10:24.000Z",
      "commit": "7e48399ca056fc43c2cd0f1f5c5b66a11037fe13",
      "fileid": "https://r2.ropensci.org/fdc29ea7da3be57ee66d6d5008995af76b3860df8bb58a00aab372a728468024",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/paicecode/actions/runs/36690544797"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-09-30T09:10:26.000Z",
      "commit": "7e48399ca056fc43c2cd0f1f5c5b66a11037fe13",
      "fileid": "https://r2.ropensci.org/a08d81da6ab6f51f80378e1d63838b9c035aeed43dec10ddfa81de91e7d33f56",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/paicecode/actions/runs/36690544797"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.2",
      "date": "2026-09-30T08:39:59.000Z",
      "commit": "7e48399ca056fc43c2cd0f1f5c5b66a11037fe13",
      "fileid": "https://r2.ropensci.org/763f2a8282c86efee675962f8900bf76227b8d7eb99f0998543b4b747d42b63a",
      "status": "success",
      "buildurl": "https://github.com/r-universe/paicecode/actions/runs/36690544797"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-09-30T08:39:02.000Z",
      "commit": "7e48399ca056fc43c2cd0f1f5c5b66a11037fe13",
      "fileid": "https://r2.ropensci.org/22630efba3df0616e2203930a55668934cf78ecfd9edc594e9187c6337f7c544",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/paicecode/actions/runs/36690544797"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-09-30T08:38:58.000Z",
      "commit": "7e48399ca056fc43c2cd0f1f5c5b66a11037fe13",
      "fileid": "https://r2.ropensci.org/3b5dc44c967177f27e5fc7652a10693b12f9f84f98289a4df14011eb1f12873e",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/paicecode/actions/runs/36690544797"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-09-30T08:39:13.000Z",
      "commit": "7e48399ca056fc43c2cd0f1f5c5b66a11037fe13",
      "fileid": "https://r2.ropensci.org/53d477a11dbd6d2316e6a2f61023aa19d27aa8efd6eac991abafd066362c6bfe",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/paicecode/actions/runs/36690544797"
    }
  ]
}